J4_7PJV_015

3D structure

PDB id

7PJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

A(4SU)AG*CAG*CGU(G7M)UCC*GU

Length

16 nucleotides

Bulged bases

7PJV|1|w|4SU|8, 7PJV|1|w|U|47, 7PJV|1|w|C|48

QA status

Modified nucleotides: 4SU, G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJV_015 not in the Motif Atlas

Homologous match to J4_3TUP_001

Geometric discrepancy: 0.3575

The information below is about J4_3TUP_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

7PJV|1|w|A|7
7PJV|1|w|4SU|8
7PJV|1|w|A|9
7PJV|1|w|G|10
*
7PJV|1|w|C|25
7PJV|1|w|A|26
7PJV|1|w|G|27
*
7PJV|1|w|C|43
7PJV|1|w|G|44
7PJV|1|w|U|45
7PJV|1|w|G7M|46
7PJV|1|w|U|47
7PJV|1|w|C|48
7PJV|1|w|C|49
*
7PJV|1|w|G|65
7PJV|1|w|U|66

Current chains

Chain w

P-site fMet-Phe-tRNA(Phe)

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain x

Elongation factor G