J4_7PJW_004

3D structure

PDB id

7PJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7PJW|1|A|G|1341, 7PJW|1|A|A|1342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJW_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.115

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7PJW|1|A|G|1310
7PJW|1|A|G|1311
7PJW|1|A|U|1312
7PJW|1|A|U|1313
7PJW|1|A|C|1314
*
7PJW|1|A|G|1338
7PJW|1|A|G|1339
7PJW|1|A|U|1340
7PJW|1|A|G|1341
7PJW|1|A|A|1342
7PJW|1|A|G|1343
*
7PJW|1|A|C|1404
7PJW|1|A|U|1405
*
7PJW|1|A|A|1597
7PJW|1|A|A|1598
7PJW|1|A|U|1599
7PJW|1|A|C|1600
7PJW|1|A|G|1601
7PJW|1|A|U|1602
7PJW|1|A|A|1603
7PJW|1|A|C|1604

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23