J4_7PJY_008

3D structure

PDB id

7PJY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7PJY|1|A|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJY_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1157

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7PJY|1|A|C|1833
7PJY|1|A|U|1834
7PJY|1|A|2MG|1835
*
7PJY|1|A|C|1905
7PJY|1|A|G|1906
*
7PJY|1|A|C|1924
7PJY|1|A|C|1925
7PJY|1|A|U|1926
7PJY|1|A|A|1927
7PJY|1|A|A|1928
7PJY|1|A|G|1929
7PJY|1|A|G|1930
7PJY|1|A|U|1931
7PJY|1|A|A|1932
7PJY|1|A|G|1933
*
7PJY|1|A|C|1967
7PJY|1|A|G|1968
7PJY|1|A|A|1969
7PJY|1|A|A|1970
7PJY|1|A|U|1971
7PJY|1|A|G|1972

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain w

Transfer RNA; tRNA