J4_7PJY_014

3D structure

PDB id

7PJY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(4SU)GG*CGU*AAGAUCG*CC

Length

16 nucleotides

Bulged bases

7PJY|1|v|4SU|8, 7PJY|1|v|U|47, 7PJY|1|v|C|48

QA status

Modified nucleotides: 4SU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJY_014 not in the Motif Atlas

Homologous match to J4_7MRL_001

Geometric discrepancy: 0.207

The information below is about J4_7MRL_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7PJY|1|v|G|7
7PJY|1|v|4SU|8
7PJY|1|v|G|9
7PJY|1|v|G|10
*
7PJY|1|v|C|25
7PJY|1|v|G|26
7PJY|1|v|U|27
*
7PJY|1|v|A|43
7PJY|1|v|A|44
7PJY|1|v|G|45
7PJY|1|v|A|46
7PJY|1|v|U|47
7PJY|1|v|C|48
7PJY|1|v|G|49
*
7PJY|1|v|C|65
7PJY|1|v|C|66

Current chains

Chain v

P-site tRNA(fMet)

Nearby chains

Chain 1

50S ribosomal protein L33

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain m

30S ribosomal protein S13