J4_7PJY_015
3D structure
- PDB id
- 7PJY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(G7M)UCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 7PJY|1|w|4SU|8, 7PJY|1|w|U|47, 7PJY|1|w|C|48
- QA status
- Modified nucleotides: 4SU, G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7PJY_015 not in the Motif Atlas
- Homologous match to J4_6CFJ_015
- Geometric discrepancy: 0.2891
- The information below is about J4_6CFJ_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7PJY|1|w|A|7
7PJY|1|w|4SU|8
7PJY|1|w|A|9
7PJY|1|w|G|10
*
7PJY|1|w|C|25
7PJY|1|w|A|26
7PJY|1|w|G|27
*
7PJY|1|w|C|43
7PJY|1|w|G|44
7PJY|1|w|U|45
7PJY|1|w|G7M|46
7PJY|1|w|U|47
7PJY|1|w|C|48
7PJY|1|w|C|49
*
7PJY|1|w|G|65
7PJY|1|w|U|66
Current chains
- Chain w
- P-site fMet-Phe-tRNA(Phe)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain s
- 30S ribosomal protein S19
- Chain x
- Elongation factor G
Coloring options: