J4_7PKQ_004

3D structure

PDB id

7PKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of the Chlamydomonas reinhardtii mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGCCGA*UUA*UUUGAA*UCAG

Length

19 nucleotides

Bulged bases

7PKQ|1|3|U|6, 7PKQ|1|3|U|9, 7PKQ|1|3|G|10

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7PKQ|1|1|C|34
7PKQ|1|1|G|35
7PKQ|1|1|C|36
7PKQ|1|1|C|37
7PKQ|1|1|G|38
7PKQ|1|1|A|39
*
7PKQ|1|2|U|211
7PKQ|1|2|U|212
7PKQ|1|2|A|213
*
7PKQ|1|3|U|5
7PKQ|1|3|U|6
7PKQ|1|3|U|9
7PKQ|1|3|G|10
7PKQ|1|3|A|11
7PKQ|1|3|A|12
*
7PKQ|1|3|U|57
7PKQ|1|3|C|58
7PKQ|1|3|A|59
7PKQ|1|3|G|60

Current chains

Chain 1

S1 rRNA

Chain 2

S2 rRNA

Chain 3

S3 rRNA

Nearby chains

Chain D

mS45-insert

Chain U

Unk1

Chain d

uS4m

Chain l

uS12m