J4_7Q4K_005
3D structure
- PDB id
- 7Q4K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGAAG*CGCG*CAG*CGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7Q4K_005 not in the Motif Atlas
- Homologous match to J4_5J7L_019
- Geometric discrepancy: 0.0608
- The information below is about J4_5J7L_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_71729.5
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
7Q4K|1|BA|G|297
7Q4K|1|BA|G|298
7Q4K|1|BA|A|299
7Q4K|1|BA|A|300
7Q4K|1|BA|G|301
*
7Q4K|1|BA|C|316
7Q4K|1|BA|G|317
7Q4K|1|BA|C|318
7Q4K|1|BA|G|319
*
7Q4K|1|BA|C|323
7Q4K|1|BA|A|324
7Q4K|1|BA|G|325
*
7Q4K|1|BA|C|337
7Q4K|1|BA|G|338
7Q4K|1|BA|U|339
7Q4K|1|BA|A|340
7Q4K|1|BA|C|341
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BE
- 50S ribosomal protein L4
- Chain BU
- 50S ribosomal protein L24
Coloring options: