J4_7Q4K_012

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7Q4K|1|BA|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7Q4K_012 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0977

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7Q4K|1|BA|C|1833
7Q4K|1|BA|U|1834
7Q4K|1|BA|2MG|1835
*
7Q4K|1|BA|C|1905
7Q4K|1|BA|G|1906
*
7Q4K|1|BA|C|1924
7Q4K|1|BA|C|1925
7Q4K|1|BA|U|1926
7Q4K|1|BA|A|1927
7Q4K|1|BA|A|1928
7Q4K|1|BA|G|1929
7Q4K|1|BA|G|1930
7Q4K|1|BA|U|1931
7Q4K|1|BA|A|1932
7Q4K|1|BA|G|1933
*
7Q4K|1|BA|C|1967
7Q4K|1|BA|G|1968
7Q4K|1|BA|A|1969
7Q4K|1|BA|A|1970
7Q4K|1|BA|U|1971
7Q4K|1|BA|G|1972

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2

Chain D2

Transfer RNA; tRNA