J4_7QGN_003
3D structure
- PDB id
- 7QGN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the SmrB-bound E. coli disome - stalled 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.37 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 7QGN|1|0|C|576, 7QGN|1|0|A|815, 7QGN|1|0|C|817, 7QGN|1|0|A|819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7QGN_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0715
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
7QGN|1|0|G|575
7QGN|1|0|C|576
7QGN|1|0|G|577
*
7QGN|1|0|C|764
7QGN|1|0|G|765
7QGN|1|0|A|766
7QGN|1|0|A|767
7QGN|1|0|A|768
7QGN|1|0|G|769
*
7QGN|1|0|C|810
7QGN|1|0|C|811
7QGN|1|0|G|812
7QGN|1|0|U|813
7QGN|1|0|A|814
7QGN|1|0|A|815
7QGN|1|0|A|816
7QGN|1|0|C|817
7QGN|1|0|G|818
7QGN|1|0|A|819
7QGN|1|0|U|820
7QGN|1|0|G|821
*
7QGN|1|0|C|879
7QGN|1|0|C|880
Current chains
- Chain 0
- 16S rRNA
Nearby chains
- Chain 7
- 30S ribosomal protein S8
- Chain D
- 30S ribosomal protein S11
- Chain E
- 30S ribosomal protein S12
- Chain H
- 30S ribosomal protein S15
- Chain J
- 30S ribosomal protein S17
- Chain v
- 30S ribosomal protein S21
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