J4_7QGN_007

3D structure

PDB id

7QGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.37 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QGN_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0549

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7QGN|1|N|G|297
7QGN|1|N|G|298
7QGN|1|N|A|299
7QGN|1|N|A|300
7QGN|1|N|G|301
*
7QGN|1|N|C|316
7QGN|1|N|G|317
7QGN|1|N|C|318
7QGN|1|N|G|319
*
7QGN|1|N|C|323
7QGN|1|N|A|324
7QGN|1|N|G|325
*
7QGN|1|N|C|337
7QGN|1|N|G|338
7QGN|1|N|U|339
7QGN|1|N|A|340
7QGN|1|N|C|341

Current chains

Chain N

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L4

Chain h

50S ribosomal protein L24