J4_7QGN_014

3D structure

PDB id

7QGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.37 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7QGN|1|N|U|1971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QGN_014 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0917

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7QGN|1|N|C|1833
7QGN|1|N|U|1834
7QGN|1|N|G|1835
*
7QGN|1|N|C|1905
7QGN|1|N|G|1906
*
7QGN|1|N|C|1924
7QGN|1|N|C|1925
7QGN|1|N|U|1926
7QGN|1|N|A|1927
7QGN|1|N|A|1928
7QGN|1|N|G|1929
7QGN|1|N|G|1930
7QGN|1|N|U|1931
7QGN|1|N|A|1932
7QGN|1|N|G|1933
*
7QGN|1|N|C|1967
7QGN|1|N|G|1968
7QGN|1|N|A|1969
7QGN|1|N|A|1970
7QGN|1|N|U|1971
7QGN|1|N|G|1972

Current chains

Chain N

23S rRNA

Nearby chains

Chain 0

Small subunit ribosomal RNA; SSU rRNA

Chain M

Transfer RNA; tRNA

Chain P

50S ribosomal protein L2