J4_7QI4_008
3D structure
- PDB id
- 7QI4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial ribosome at 2.2 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.21 Å
Loop
- Sequence
- GAG*CAAUAG*CCCUAAACCUCA*UC
- Length
- 23 nucleotides
- Bulged bases
- 7QI4|1|AA|A|942, 7QI4|1|AA|A|1103, 7QI4|1|AA|C|1106, 7QI4|1|AA|C|1108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7QI4_008 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.239
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
7QI4|1|AA|G|941
7QI4|1|AA|A|942
7QI4|1|AA|G|943
*
7QI4|1|AA|C|1052
7QI4|1|AA|A|1053
7QI4|1|AA|A|1054
7QI4|1|AA|U|1055
7QI4|1|AA|A|1056
7QI4|1|AA|G|1057
*
7QI4|1|AA|C|1098
7QI4|1|AA|C|1099
7QI4|1|AA|C|1100
7QI4|1|AA|U|1101
7QI4|1|AA|A|1102
7QI4|1|AA|A|1103
7QI4|1|AA|A|1104
7QI4|1|AA|C|1105
7QI4|1|AA|C|1106
7QI4|1|AA|U|1107
7QI4|1|AA|C|1108
7QI4|1|AA|A|1109
*
7QI4|1|AA|U|1132
7QI4|1|AA|C|1133
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain A2
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1
- Chain A3
- Aurora kinase A-interacting protein
- Chain AI
- 28S ribosomal protein S11, mitochondrial
- Chain AJ
- 28S ribosomal protein S12, mitochondrial
- Chain AL
- 28S ribosomal protein S15, mitochondrial
- Chain AN
- 28S ribosomal protein S17, mitochondrial
- Chain AQ
- MRPS21 isoform 1
- Chain AT
- 28S ribosomal protein S25, mitochondrial
Coloring options: