J4_7QI5_014
3D structure
- PDB id
- 7QI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- AUAG*CAG*CAGAUG*CU
- Length
- 15 nucleotides
- Bulged bases
- 7QI5|1|Ay|U|8, 7QI5|1|Ay|U|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7QI5_014 not in the Motif Atlas
- Homologous match to J4_5HR6_001
- Geometric discrepancy: 0.1591
- The information below is about J4_5HR6_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.2
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 49
Unit IDs
7QI5|1|Ay|A|7
7QI5|1|Ay|U|8
7QI5|1|Ay|A|9
7QI5|1|Ay|G|10
*
7QI5|1|Ay|C|25
7QI5|1|Ay|A|26
7QI5|1|Ay|G|27
*
7QI5|1|Ay|C|43
7QI5|1|Ay|A|44
7QI5|1|Ay|G|45
7QI5|1|Ay|A|46
7QI5|1|Ay|U|48
7QI5|1|Ay|G|49
*
7QI5|1|Ay|C|65
7QI5|1|Ay|U|66
Current chains
- Chain Ay
- E/E-tRNA
Nearby chains
- Chain 1
- 39S ribosomal protein L33, mitochondrial
- Chain AF
- 28S ribosomal protein S7, mitochondrial
- Chain q
- Growth arrest and DNA damage-inducible proteins-interacting protein 1
Coloring options: