J4_7QI6_004
3D structure
- PDB id
- 7QI6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- CUG*CC*GCAAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 7QI6|1|A|U|2634
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7QI6_004 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.1342
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
7QI6|1|A|C|2544
7QI6|1|A|U|2545
7QI6|1|A|G|2546
*
7QI6|1|A|C|2569
7QI6|1|A|C|2570
*
7QI6|1|A|G|2587
7QI6|1|A|C|2588
7QI6|1|A|A|2589
7QI6|1|A|A|2590
7QI6|1|A|A|2591
7QI6|1|A|G|2592
7QI6|1|A|G|2593
7QI6|1|A|U|2594
7QI6|1|A|A|2595
7QI6|1|A|G|2596
*
7QI6|1|A|U|2630
7QI6|1|A|G|2631
7QI6|1|A|A|2632
7QI6|1|A|A|2633
7QI6|1|A|U|2634
7QI6|1|A|G|2635
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain A3
- Aurora kinase A-interacting protein
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain Ax
- Transfer RNA; tRNA
- Chain D
- 39S ribosomal protein L2, mitochondrial
Coloring options: