J4_7QQ3_005

3D structure

PDB id

7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7QQ3|1|I|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QQ3_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0705

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7QQ3|1|I|G|1310
7QQ3|1|I|G|1311
7QQ3|1|I|U|1312
7QQ3|1|I|U|1313
7QQ3|1|I|C|1314
*
7QQ3|1|I|G|1338
7QQ3|1|I|G|1339
7QQ3|1|I|U|1340
7QQ3|1|I|G|1341
7QQ3|1|I|A|1342
7QQ3|1|I|G|1343
*
7QQ3|1|I|C|1404
7QQ3|1|I|U|1405
*
7QQ3|1|I|A|1597
7QQ3|1|I|A|1598
7QQ3|1|I|U|1599
7QQ3|1|I|C|1600
7QQ3|1|I|G|1601
7QQ3|1|I|U|1602
7QQ3|1|I|A|1603
7QQ3|1|I|C|1604

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L23

Chain k

50S ribosomal protein L34