J4_7QQ3_009

3D structure

PDB id

7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7QQ3|1|I|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QQ3_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1074

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7QQ3|1|I|C|1833
7QQ3|1|I|U|1834
7QQ3|1|I|2MG|1835
*
7QQ3|1|I|C|1905
7QQ3|1|I|G|1906
*
7QQ3|1|I|C|1924
7QQ3|1|I|C|1925
7QQ3|1|I|U|1926
7QQ3|1|I|A|1927
7QQ3|1|I|A|1928
7QQ3|1|I|G|1929
7QQ3|1|I|G|1930
7QQ3|1|I|U|1931
7QQ3|1|I|A|1932
7QQ3|1|I|G|1933
*
7QQ3|1|I|C|1967
7QQ3|1|I|G|1968
7QQ3|1|I|A|1969
7QQ3|1|I|A|1970
7QQ3|1|I|U|1971
7QQ3|1|I|G|1972

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2