J4_7QV1_016

3D structure

PDB id

7QV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis collided disome (Leading 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

7QV1|1|V|A|2000

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QV1_016 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1521

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7QV1|1|V|C|1862
7QV1|1|V|U|1863
7QV1|1|V|G|1864
*
7QV1|1|V|C|1934
7QV1|1|V|G|1935
*
7QV1|1|V|C|1953
7QV1|1|V|C|1954
7QV1|1|V|U|1955
7QV1|1|V|A|1956
7QV1|1|V|A|1957
7QV1|1|V|G|1958
7QV1|1|V|G|1959
7QV1|1|V|U|1960
7QV1|1|V|A|1961
7QV1|1|V|G|1962
*
7QV1|1|V|C|1996
7QV1|1|V|G|1997
7QV1|1|V|A|1998
7QV1|1|V|A|1999
7QV1|1|V|A|2000
7QV1|1|V|G|2001

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

Transfer RNA; tRNA

Chain a

Small subunit ribosomal RNA; SSU rRNA