J4_7RQA_006

3D structure

PDB id

7RQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

7RQA|1|1A|A|1445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7RQA_006 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.0842

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

9

Unit IDs

7RQA|1|1A|G|1444
7RQA|1|1A|A|1445
7RQA|1|1A|C|1445|||A
*
7RQA|1|1A|G|1466
7RQA|1|1A|C|1467
*
7RQA|1|1A|G|1525
7RQA|1|1A|G|1526
*
7RQA|1|1A|C|1546
7RQA|1|1A|C|1547

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains