J4_7RQB_019

3D structure

PDB id

7RQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

7RQB|1|2A|A|1445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7RQB_019 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.145

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7RQB|1|2A|G|1444
7RQB|1|2A|A|1445
7RQB|1|2A|C|1445|||A
*
7RQB|1|2A|G|1466
7RQB|1|2A|C|1467
*
7RQB|1|2A|G|1525
7RQB|1|2A|G|1526
*
7RQB|1|2A|C|1546
7RQB|1|2A|C|1547

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains