J4_7RQD_002
3D structure
- PDB id
- 7RQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CGAAG*CGCC*GAG*CGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7RQD_002 not in the Motif Atlas
- Homologous match to J4_9DFE_002
- Geometric discrepancy: 0.0612
- The information below is about J4_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
7RQD|1|1A|C|297
7RQD|1|1A|G|298
7RQD|1|1A|A|299
7RQD|1|1A|A|300
7RQD|1|1A|G|301
*
7RQD|1|1A|C|316
7RQD|1|1A|G|317
7RQD|1|1A|C|318
7RQD|1|1A|C|319
*
7RQD|1|1A|G|323
7RQD|1|1A|A|324
7RQD|1|1A|G|325
*
7RQD|1|1A|C|337
7RQD|1|1A|G|338
7RQD|1|1A|U|339
7RQD|1|1A|A|340
7RQD|1|1A|G|341
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1F
- 50S ribosomal protein L4
- Chain 1Y
- 50S ribosomal protein L24
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: