J4_7RR5_011
3D structure
- PDB id
- 7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosomal complex bound with Rbg1/Tma46
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 7RR5|1|C2|A|359
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7RR5_011 not in the Motif Atlas
- Homologous match to J4_8C3A_021
- Geometric discrepancy: 0.0868
- The information below is about J4_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78231.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7RR5|1|C2|C|99
7RR5|1|C2|A|100
7RR5|1|C2|U|101
7RR5|1|C2|U|102
7RR5|1|C2|A|103
7RR5|1|C2|A|104
7RR5|1|C2|A|105
7RR5|1|C2|U|106
7RR5|1|C2|C|107
*
7RR5|1|C2|G|307
7RR5|1|C2|C|308
7RR5|1|C2|C|309
*
7RR5|1|C2|G|357
7RR5|1|C2|U|358
7RR5|1|C2|A|359
7RR5|1|C2|A|360
7RR5|1|C2|C|361
*
7RR5|1|C2|G|383
7RR5|1|C2|G|384
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4
- Chain SI
- RPS8A isoform 1
- Chain SL
- 40S ribosomal protein S11-B
- Chain SX
- 40S ribosomal protein S23
Coloring options: