J4_7RR5_013
3D structure
- PDB id
- 7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosomal complex bound with Rbg1/Tma46
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- GUGG*CGU*AAGAUUC*GC
- Length
- 16 nucleotides
- Bulged bases
- 7RR5|1|P|U|8, 7RR5|1|P|U|47, 7RR5|1|P|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7RR5_013 not in the Motif Atlas
- Homologous match to J4_3TUP_001
- Geometric discrepancy: 0.237
- The information below is about J4_3TUP_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
7RR5|1|P|G|7
7RR5|1|P|U|8
7RR5|1|P|G|9
7RR5|1|P|G|10
*
7RR5|1|P|C|25
7RR5|1|P|G|26
7RR5|1|P|U|27
*
7RR5|1|P|A|43
7RR5|1|P|A|44
7RR5|1|P|G|45
7RR5|1|P|A|46
7RR5|1|P|U|47
7RR5|1|P|U|48
7RR5|1|P|C|49
*
7RR5|1|P|G|65
7RR5|1|P|C|66
Current chains
- Chain P
- P-tRNA
Nearby chains
- Chain A
- Transfer RNA; tRNA
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain C2
- Small subunit ribosomal RNA; SSU rRNA
- Chain LI
- RPL10 isoform 1
- Chain SZ
- RPS25A isoform 1
Coloring options: