J4_7RYG_009

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7RYG|1|A|U|1967

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7RYG_009 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1906

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7RYG|1|A|C|1829
7RYG|1|A|U|1830
7RYG|1|A|G|1831
*
7RYG|1|A|C|1901
7RYG|1|A|G|1902
*
7RYG|1|A|C|1920
7RYG|1|A|C|1921
7RYG|1|A|U|1922
7RYG|1|A|A|1923
7RYG|1|A|A|1924
7RYG|1|A|G|1925
7RYG|1|A|G|1926
7RYG|1|A|U|1927
7RYG|1|A|A|1928
7RYG|1|A|G|1929
*
7RYG|1|A|C|1963
7RYG|1|A|G|1964
7RYG|1|A|A|1965
7RYG|1|A|A|1966
7RYG|1|A|U|1967
7RYG|1|A|G|1968

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA