J4_7RYH_005

3D structure

PDB id

7RYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: Empty 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7RYH|1|A|G|1336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7RYH_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0872

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7RYH|1|A|G|1305
7RYH|1|A|G|1306
7RYH|1|A|U|1307
7RYH|1|A|U|1308
7RYH|1|A|C|1309
*
7RYH|1|A|G|1333
7RYH|1|A|G|1334
7RYH|1|A|U|1335
7RYH|1|A|G|1336
7RYH|1|A|A|1337
7RYH|1|A|G|1338
*
7RYH|1|A|C|1399
7RYH|1|A|U|1400
*
7RYH|1|A|A|1595
7RYH|1|A|A|1596
7RYH|1|A|U|1597
7RYH|1|A|C|1598
7RYH|1|A|G|1599
7RYH|1|A|U|1600
7RYH|1|A|A|1601
7RYH|1|A|C|1602

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain S

50S ribosomal protein L23