J4_7S1I_006

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7S1I_006 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0525

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7S1I|1|I|G|297
7S1I|1|I|G|298
7S1I|1|I|A|299
7S1I|1|I|A|300
7S1I|1|I|G|301
*
7S1I|1|I|C|316
7S1I|1|I|G|317
7S1I|1|I|C|318
7S1I|1|I|G|319
*
7S1I|1|I|C|323
7S1I|1|I|A|324
7S1I|1|I|G|325
*
7S1I|1|I|C|337
7S1I|1|I|G|338
7S1I|1|I|U|339
7S1I|1|I|A|340
7S1I|1|I|C|341

Current chains

Chain I

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain c

50S ribosomal protein L24