J4_7S1I_009

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7S1I|1|I|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7S1I_009 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0493

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7S1I|1|I|G|1310
7S1I|1|I|G|1311
7S1I|1|I|U|1312
7S1I|1|I|U|1313
7S1I|1|I|C|1314
*
7S1I|1|I|G|1338
7S1I|1|I|G|1339
7S1I|1|I|U|1340
7S1I|1|I|G|1341
7S1I|1|I|A|1342
7S1I|1|I|G|1343
*
7S1I|1|I|C|1404
7S1I|1|I|U|1405
*
7S1I|1|I|A|1597
7S1I|1|I|A|1598
7S1I|1|I|U|1599
7S1I|1|I|C|1600
7S1I|1|I|G|1601
7S1I|1|I|U|1602
7S1I|1|I|A|1603
7S1I|1|I|C|1604

Current chains

Chain I

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L23

Chain k

50S ribosomal protein L34