J4_7S1J_003
3D structure
- PDB id
- 7S1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wild-type Escherichia coli ribosome with antibiotic radezolid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 7S1J|1|C|C|576, 7S1J|1|C|A|815, 7S1J|1|C|C|817, 7S1J|1|C|A|819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7S1J_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0678
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
7S1J|1|C|G|575
7S1J|1|C|C|576
7S1J|1|C|G|577
*
7S1J|1|C|C|764
7S1J|1|C|G|765
7S1J|1|C|A|766
7S1J|1|C|A|767
7S1J|1|C|A|768
7S1J|1|C|G|769
*
7S1J|1|C|C|810
7S1J|1|C|C|811
7S1J|1|C|G|812
7S1J|1|C|U|813
7S1J|1|C|A|814
7S1J|1|C|A|815
7S1J|1|C|A|816
7S1J|1|C|C|817
7S1J|1|C|G|818
7S1J|1|C|A|819
7S1J|1|C|U|820
7S1J|1|C|G|821
*
7S1J|1|C|C|879
7S1J|1|C|C|880
Current chains
- Chain C
- 16S rRNA
Nearby chains
- Chain 3
- 30S ribosomal protein S21
- Chain I
- Large subunit ribosomal RNA; LSU rRNA
- Chain o
- 30S ribosomal protein S8
- Chain t
- 30S ribosomal protein S12
- Chain w
- 30S ribosomal protein S15
- Chain y
- 30S ribosomal protein S17
Coloring options: