3D structure

PDB id
7S1J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Wild-type Escherichia coli ribosome with antibiotic radezolid
Experimental method
ELECTRON MICROSCOPY
Resolution
2.47 Å

Loop

Sequence
GGAAG*CGCG*CAG*CGUAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7S1J_005 not in the Motif Atlas
Homologous match to J4_5J7L_019
Geometric discrepancy: 0.0567
The information below is about J4_5J7L_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

7S1J|1|I|G|297
7S1J|1|I|G|298
7S1J|1|I|A|299
7S1J|1|I|A|300
7S1J|1|I|G|301
*
7S1J|1|I|C|316
7S1J|1|I|G|317
7S1J|1|I|C|318
7S1J|1|I|G|319
*
7S1J|1|I|C|323
7S1J|1|I|A|324
7S1J|1|I|G|325
*
7S1J|1|I|C|337
7S1J|1|I|G|338
7S1J|1|I|U|339
7S1J|1|I|A|340
7S1J|1|I|C|341

Current chains

Chain I
23S rRNA

Nearby chains

Chain M
50S ribosomal protein L4
Chain c
50S ribosomal protein L24

Coloring options:


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