J4_7S1J_006
3D structure
- PDB id
- 7S1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wild-type Escherichia coli ribosome with antibiotic radezolid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 7S1J|1|I|A|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7S1J_006 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.1517
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7S1J|1|I|C|601
7S1J|1|I|A|602
7S1J|1|I|A|603
7S1J|1|I|G|604
*
7S1J|1|I|C|624
7S1J|1|I|G|625
7S1J|1|I|A|626
7S1J|1|I|A|627
7S1J|1|I|G|628
*
7S1J|1|I|C|635
7S1J|1|I|G|636
7S1J|1|I|A|637
7S1J|1|I|G|638
*
7S1J|1|I|C|650
7S1J|1|I|G|651
7S1J|1|I|U|652
7S1J|1|I|U|653
7S1J|1|I|A|654
7S1J|1|I|A|655
7S1J|1|I|G|656
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain M
- 50S ribosomal protein L4
- Chain T
- 50S ribosomal protein L15
- Chain l
- 50S ribosomal protein L35
Coloring options: