3D structure

PDB id
7S1K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid
Experimental method
ELECTRON MICROSCOPY
Resolution
2.42 Å

Loop

Sequence
CAAG*CGAAG*CGAG*CGUUAAG
Length
20 nucleotides
Bulged bases
7S1K|1|I|A|654
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7S1K_007 not in the Motif Atlas
Homologous match to J4_5J7L_020
Geometric discrepancy: 0.1547
The information below is about J4_5J7L_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_60168.1
Basepair signature
cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
Number of instances in this motif group
2

Unit IDs

7S1K|1|I|C|601
7S1K|1|I|A|602
7S1K|1|I|A|603
7S1K|1|I|G|604
*
7S1K|1|I|C|624
7S1K|1|I|G|625
7S1K|1|I|A|626
7S1K|1|I|A|627
7S1K|1|I|G|628
*
7S1K|1|I|C|635
7S1K|1|I|G|636
7S1K|1|I|A|637
7S1K|1|I|G|638
*
7S1K|1|I|C|650
7S1K|1|I|G|651
7S1K|1|I|U|652
7S1K|1|I|U|653
7S1K|1|I|A|654
7S1K|1|I|A|655
7S1K|1|I|G|656

Current chains

Chain I
23S rRNA

Nearby chains

Chain M
50S ribosomal protein L4
Chain T
50S ribosomal protein L15
Chain l
50S ribosomal protein L35

Coloring options:


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