J4_7S9U_004

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAG*CC*GAUC*GG

Length

14 nucleotides

Bulged bases

7S9U|1|A|G|1311, 7S9U|1|A|A|1312, 7S9U|1|A|A|1314, 7S9U|1|A|U|1692

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7S9U_004 not in the Motif Atlas

Homologous match to J4_4WF9_004

Geometric discrepancy: 0.195

The information below is about J4_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7S9U|1|A|C|1310
7S9U|1|A|G|1311
7S9U|1|A|A|1312
7S9U|1|A|A|1313
7S9U|1|A|A|1314
7S9U|1|A|G|1315
*
7S9U|1|A|C|1333
7S9U|1|A|C|1334
*
7S9U|1|A|G|1690
7S9U|1|A|A|1691
7S9U|1|A|U|1692
7S9U|1|A|C|1693
*
7S9U|1|A|G|2038
7S9U|1|A|G|2039

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22

Chain b

50S ribosomal protein L32