J4_7SA4_008

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SA4_008 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0532

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7SA4|1|1|A|1772
7SA4|1|1|A|1773
7SA4|1|1|C|1774
7SA4|1|1|U|1775
7SA4|1|1|G|1776
*
7SA4|1|1|C|1788
7SA4|1|1|A|1789
7SA4|1|1|C|1790
7SA4|1|1|A|1791
7SA4|1|1|G|1792
*
7SA4|1|1|U|1827
7SA4|1|1|G|1828
7SA4|1|1|A|1829
7SA4|1|1|C|1830
*
7SA4|1|1|G|1975
7SA4|1|1|U|1976
7SA4|1|1|A|1977
7SA4|1|1|A|1978
7SA4|1|1|U|1979

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2