J4_7SA4_015
3D structure
- PDB id
- 7SA4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Damaged 70S ribosome with PrfH bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 7SA4|1|5|U|7, 7SA4|1|5|U|47, 7SA4|1|5|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7SA4_015 not in the Motif Atlas
- Homologous match to J4_3TUP_001
- Geometric discrepancy: 0.2302
- The information below is about J4_3TUP_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
7SA4|1|5|G|6
7SA4|1|5|U|7
7SA4|1|5|G|8
7SA4|1|5|G|9
*
7SA4|1|5|C|25
7SA4|1|5|G|26
7SA4|1|5|U|27
*
7SA4|1|5|A|43
7SA4|1|5|A|44
7SA4|1|5|G|45
7SA4|1|5|G|46
7SA4|1|5|U|47
7SA4|1|5|C|48
7SA4|1|5|G|49
*
7SA4|1|5|C|65
7SA4|1|5|C|66
Current chains
- Chain 5
- P-tRNA, E-tRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain r
- 30S ribosomal protein S13
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