J4_7SAM_001

3D structure

PDB id

7SAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA-like Structure from Brome Mosaic Virus

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUUUG*CUUCGGAAG*CGUG*CGG

Length

21 nucleotides

Bulged bases

7SAM|1|A|U|44, 7SAM|1|A|U|45, 7SAM|1|A|U|66, 7SAM|1|A|U|67, 7SAM|1|A|C|68, 7SAM|1|A|G|69, 7SAM|1|A|G|70, 7SAM|1|A|U|90

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SAM|1|A|C|42
7SAM|1|A|U|43
7SAM|1|A|U|44
7SAM|1|A|U|45
7SAM|1|A|G|46
*
7SAM|1|A|C|65
7SAM|1|A|U|66
7SAM|1|A|U|67
7SAM|1|A|C|68
7SAM|1|A|G|69
7SAM|1|A|G|70
7SAM|1|A|A|71
7SAM|1|A|A|72
7SAM|1|A|G|73
*
7SAM|1|A|C|88
7SAM|1|A|G|89
7SAM|1|A|U|90
7SAM|1|A|G|91
*
7SAM|1|A|C|121
7SAM|1|A|G|122
7SAM|1|A|G|123

Current chains

Chain A

Viral RNA

Nearby chains