J4_7SFR_007

3D structure

PDB id

7SFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmethylated Mtb Ribosome 50S with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7SFR|1|A|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SFR_007 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0932

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.3

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7SFR|1|A|C|2067
7SFR|1|A|U|2068
7SFR|1|A|G|2069
*
7SFR|1|A|C|2143
7SFR|1|A|G|2144
*
7SFR|1|A|C|2162
7SFR|1|A|C|2163
7SFR|1|A|U|2164
7SFR|1|A|A|2165
7SFR|1|A|A|2166
7SFR|1|A|G|2167
7SFR|1|A|G|2168
7SFR|1|A|U|2169
7SFR|1|A|A|2170
7SFR|1|A|G|2171
*
7SFR|1|A|C|2205
7SFR|1|A|G|2206
7SFR|1|A|A|2207
7SFR|1|A|A|2208
7SFR|1|A|U|2209
7SFR|1|A|G|2210

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA