J4_7SS9_011

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAGUAAUG*UG*CUAGCU*AGCCA

Length

22 nucleotides

Bulged bases

7SS9|1|3|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SS9|1|3|U|114
7SS9|1|3|G|115
7SS9|1|3|A|116
7SS9|1|3|G|117
7SS9|1|3|U|118
7SS9|1|3|A|119
7SS9|1|3|A|120
7SS9|1|3|U|121
7SS9|1|3|G|122
*
7SS9|1|3|U|239
7SS9|1|3|G|240
*
7SS9|1|3|C|286
7SS9|1|3|U|287
7SS9|1|3|A|288
7SS9|1|3|G|289
7SS9|1|3|C|290
7SS9|1|3|U|291
*
7SS9|1|3|A|309
7SS9|1|3|G|310
7SS9|1|3|C|311
7SS9|1|3|C|312
7SS9|1|3|A|313

Current chains

Chain 3

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16

Chain V

30S ribosomal protein S17