J4_7SS9_022

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

7SS9|1|6|U|8

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SS9_022 not in the Motif Atlas

Homologous match to J4_7VNV_001

Geometric discrepancy: 0.2892

The information below is about J4_7VNV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7SS9|1|6|G|7
7SS9|1|6|U|8
7SS9|1|6|G|9
7SS9|1|6|G|10
*
7SS9|1|6|C|25
7SS9|1|6|G|26
7SS9|1|6|U|27
*
7SS9|1|6|A|43
7SS9|1|6|A|44
7SS9|1|6|G|45
7SS9|1|6|G|46
7SS9|1|6|U|47
7SS9|1|6|C|48
7SS9|1|6|G|49
*
7SS9|1|6|C|65
7SS9|1|6|C|66

Current chains

Chain 6

tRNA fMet

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain 5

Transfer RNA; tRNA

Chain C

50S ribosomal protein L33