J4_7SSD_002
3D structure
- PDB id
- 7SSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mid translocation intermediate with EF-G bound with GDP (Structure IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 7SSD|1|1|A|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7SSD_002 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.1366
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7SSD|1|1|C|601
7SSD|1|1|A|602
7SSD|1|1|A|603
7SSD|1|1|G|604
*
7SSD|1|1|C|624
7SSD|1|1|G|625
7SSD|1|1|A|626
7SSD|1|1|A|627
7SSD|1|1|G|628
*
7SSD|1|1|C|635
7SSD|1|1|G|636
7SSD|1|1|A|637
7SSD|1|1|G|638
*
7SSD|1|1|C|650
7SSD|1|1|G|651
7SSD|1|1|U|652
7SSD|1|1|U|653
7SSD|1|1|A|654
7SSD|1|1|A|655
7SSD|1|1|G|656
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L35
- Chain d
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L15
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