J4_7SSD_004

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7SSD|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SSD_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1126

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7SSD|1|1|G|1310
7SSD|1|1|G|1311
7SSD|1|1|U|1312
7SSD|1|1|U|1313
7SSD|1|1|C|1314
*
7SSD|1|1|G|1338
7SSD|1|1|G|1339
7SSD|1|1|U|1340
7SSD|1|1|G|1341
7SSD|1|1|A|1342
7SSD|1|1|G|1343
*
7SSD|1|1|C|1404
7SSD|1|1|U|1405
*
7SSD|1|1|A|1597
7SSD|1|1|A|1598
7SSD|1|1|U|1599
7SSD|1|1|C|1600
7SSD|1|1|G|1601
7SSD|1|1|U|1602
7SSD|1|1|A|1603
7SSD|1|1|C|1604

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain t

50S ribosomal protein L23