J4_7SSD_008
3D structure
- PDB id
- 7SSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mid translocation intermediate with EF-G bound with GDP (Structure IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 7SSD|1|1|U|1971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7SSD_008 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.1439
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
7SSD|1|1|C|1833
7SSD|1|1|U|1834
7SSD|1|1|G|1835
*
7SSD|1|1|C|1905
7SSD|1|1|G|1906
*
7SSD|1|1|C|1924
7SSD|1|1|C|1925
7SSD|1|1|U|1926
7SSD|1|1|A|1927
7SSD|1|1|A|1928
7SSD|1|1|G|1929
7SSD|1|1|G|1930
7SSD|1|1|U|1931
7SSD|1|1|A|1932
7SSD|1|1|G|1933
*
7SSD|1|1|C|1967
7SSD|1|1|G|1968
7SSD|1|1|A|1969
7SSD|1|1|A|1970
7SSD|1|1|U|1971
7SSD|1|1|G|1972
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain 5
- Transfer RNA; tRNA
- Chain b
- 50S ribosomal protein L2
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