J4_7SSD_013
3D structure
- PDB id
- 7SSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mid translocation intermediate with EF-G bound with GDP (Structure IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 7SSD|1|3|C|576, 7SSD|1|3|A|815, 7SSD|1|3|C|817, 7SSD|1|3|A|819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7SSD_013 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.1302
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
7SSD|1|3|G|575
7SSD|1|3|C|576
7SSD|1|3|G|577
*
7SSD|1|3|C|764
7SSD|1|3|G|765
7SSD|1|3|A|766
7SSD|1|3|A|767
7SSD|1|3|A|768
7SSD|1|3|G|769
*
7SSD|1|3|C|810
7SSD|1|3|C|811
7SSD|1|3|G|812
7SSD|1|3|U|813
7SSD|1|3|A|814
7SSD|1|3|A|815
7SSD|1|3|A|816
7SSD|1|3|C|817
7SSD|1|3|G|818
7SSD|1|3|A|819
7SSD|1|3|U|820
7SSD|1|3|G|821
*
7SSD|1|3|C|879
7SSD|1|3|C|880
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 30S ribosomal protein S8
- Chain P
- 30S ribosomal protein S11
- Chain Q
- 30S ribosomal protein S12
- Chain T
- 30S ribosomal protein S15
- Chain V
- 30S ribosomal protein S17
- Chain Z
- 30S ribosomal protein S21
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