J4_7SSD_014
3D structure
- PDB id
- 7SSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mid translocation intermediate with EF-G bound with GDP (Structure IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 7SSD|1|6|U|8, 7SSD|1|6|U|47, 7SSD|1|6|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7SSD_014 not in the Motif Atlas
- Homologous match to J4_1QU2_001
- Geometric discrepancy: 0.2788
- The information below is about J4_1QU2_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7SSD|1|6|G|7
7SSD|1|6|U|8
7SSD|1|6|G|9
7SSD|1|6|G|10
*
7SSD|1|6|C|25
7SSD|1|6|G|26
7SSD|1|6|U|27
*
7SSD|1|6|A|43
7SSD|1|6|A|44
7SSD|1|6|G|45
7SSD|1|6|G|46
7SSD|1|6|U|47
7SSD|1|6|C|48
7SSD|1|6|G|49
*
7SSD|1|6|C|65
7SSD|1|6|C|66
Current chains
- Chain 6
- tRNA fMet
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain 5
- Transfer RNA; tRNA
- Chain C
- 50S ribosomal protein L33
- Chain P
- 30S ribosomal protein S11
- Chain R
- 30S ribosomal protein S13
Coloring options: