3D structure

PDB id
7SSN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUG*CG*CCUAAGGUAG*CGAAUG
Length
21 nucleotides
Bulged bases
7SSN|1|1|U|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7SSN_008 not in the Motif Atlas
Homologous match to J4_5J7L_026
Geometric discrepancy: 0.3424
The information below is about J4_5J7L_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

7SSN|1|1|C|1833
7SSN|1|1|U|1834
7SSN|1|1|G|1835
*
7SSN|1|1|C|1905
7SSN|1|1|G|1906
*
7SSN|1|1|C|1924
7SSN|1|1|C|1925
7SSN|1|1|U|1926
7SSN|1|1|A|1927
7SSN|1|1|A|1928
7SSN|1|1|G|1929
7SSN|1|1|G|1930
7SSN|1|1|U|1931
7SSN|1|1|A|1932
7SSN|1|1|G|1933
*
7SSN|1|1|C|1967
7SSN|1|1|G|1968
7SSN|1|1|A|1969
7SSN|1|1|A|1970
7SSN|1|1|U|1971
7SSN|1|1|G|1972

Current chains

Chain 1
23S rRNA

Nearby chains

Chain 3
Small subunit ribosomal RNA; SSU rRNA
Chain 6
Transfer RNA; tRNA
Chain b
50S ribosomal protein L2

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