J4_7ST2_014
3D structure
- PDB id
- 7ST2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUAG*CAA*UGGGUCG*UC
- Length
- 16 nucleotides
- Bulged bases
- 7ST2|1|5|U|8, 7ST2|1|5|U|47, 7ST2|1|5|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ST2_014 not in the Motif Atlas
- Homologous match to J4_1H4S_001
- Geometric discrepancy: 0.2128
- The information below is about J4_1H4S_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7ST2|1|5|G|7
7ST2|1|5|U|8
7ST2|1|5|A|9
7ST2|1|5|G|10
*
7ST2|1|5|C|25
7ST2|1|5|A|26
7ST2|1|5|A|27
*
7ST2|1|5|U|43
7ST2|1|5|G|44
7ST2|1|5|G|45
7ST2|1|5|G|46
7ST2|1|5|U|47
7ST2|1|5|C|48
7ST2|1|5|G|49
*
7ST2|1|5|U|65
7ST2|1|5|C|66
Current chains
- Chain 5
- tRNA Pro
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain R
- 30S ribosomal protein S13
- Chain m
- 50S ribosomal protein L16
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