J4_7ST6_017

3D structure

PDB id

7ST6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation, non-rotated 70S ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7ST6|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ST6_017 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1261

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7ST6|1|1|G|1310
7ST6|1|1|G|1311
7ST6|1|1|U|1312
7ST6|1|1|U|1313
7ST6|1|1|C|1314
*
7ST6|1|1|G|1338
7ST6|1|1|G|1339
7ST6|1|1|U|1340
7ST6|1|1|G|1341
7ST6|1|1|A|1342
7ST6|1|1|G|1343
*
7ST6|1|1|C|1404
7ST6|1|1|U|1405
*
7ST6|1|1|A|1597
7ST6|1|1|A|1598
7ST6|1|1|U|1599
7ST6|1|1|C|1600
7ST6|1|1|G|1601
7ST6|1|1|U|1602
7ST6|1|1|A|1603
7ST6|1|1|C|1604

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain t

50S ribosomal protein L23