J4_7ST7_008
3D structure
- PDB id
- 7ST7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 7ST7|1|1|U|1971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ST7_008 not in the Motif Atlas
- Homologous match to J4_5J7L_026
- Geometric discrepancy: 0.323
- The information below is about J4_5J7L_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
7ST7|1|1|C|1833
7ST7|1|1|U|1834
7ST7|1|1|G|1835
*
7ST7|1|1|C|1905
7ST7|1|1|G|1906
*
7ST7|1|1|C|1924
7ST7|1|1|C|1925
7ST7|1|1|U|1926
7ST7|1|1|A|1927
7ST7|1|1|A|1928
7ST7|1|1|G|1929
7ST7|1|1|G|1930
7ST7|1|1|U|1931
7ST7|1|1|A|1932
7ST7|1|1|G|1933
*
7ST7|1|1|C|1967
7ST7|1|1|G|1968
7ST7|1|1|A|1969
7ST7|1|1|A|1970
7ST7|1|1|U|1971
7ST7|1|1|G|1972
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain 6
- Transfer RNA; tRNA
- Chain b
- 50S ribosomal protein L2
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