J4_7SYG_003

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAGAG*UA*UAGGGUG*CC

Length

16 nucleotides

Bulged bases

7SYG|1|z|A|136

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYG|1|z|G|133
7SYG|1|z|A|134
7SYG|1|z|G|135
7SYG|1|z|A|136
7SYG|1|z|G|137
*
7SYG|1|z|U|287
7SYG|1|z|A|288
*
7SYG|1|z|U|297
7SYG|1|z|A|298
7SYG|1|z|G|299
7SYG|1|z|G|300
7SYG|1|z|G|301
7SYG|1|z|U|302
7SYG|1|z|G|303
*
7SYG|1|z|C|314
7SYG|1|z|C|315

Current chains

Chain z

HCV IRES

Nearby chains