J4_7SYG_005

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAAC*GAAU*AUUUG*CC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYG|1|z|G|153
7SYG|1|z|A|154
7SYG|1|z|A|155
7SYG|1|z|C|156
*
7SYG|1|z|G|171
7SYG|1|z|A|172
7SYG|1|z|A|173
7SYG|1|z|U|174
*
7SYG|1|z|A|225
7SYG|1|z|U|226
7SYG|1|z|U|227
7SYG|1|z|U|228
7SYG|1|z|G|229
*
7SYG|1|z|C|238
7SYG|1|z|C|239

Current chains

Chain z

HCV IRES

Nearby chains

Chain I

40S ribosomal protein S7

Chain c

eS27