3D structure

PDB id
7SYM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
CAUUAAAUC*GCC*GUGAC*GG
Length
19 nucleotides
Bulged bases
7SYM|1|2|G|407
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7SYM_001 not in the Motif Atlas
Homologous match to J4_8C3A_021
Geometric discrepancy: 0.1965
The information below is about J4_8C3A_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_78231.1
Basepair signature
cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
Number of instances in this motif group
2

Unit IDs

7SYM|1|2|C|98
7SYM|1|2|A|99
7SYM|1|2|U|100
7SYM|1|2|U|101
7SYM|1|2|A|102
7SYM|1|2|A|103
7SYM|1|2|A|104
7SYM|1|2|U|105
7SYM|1|2|C|106
*
7SYM|1|2|G|355
7SYM|1|2|C|356
7SYM|1|2|C|357
*
7SYM|1|2|G|405
7SYM|1|2|U|406
7SYM|1|2|G|407
7SYM|1|2|A|408
7SYM|1|2|C|409
*
7SYM|1|2|G|431
7SYM|1|2|G|432

Current chains

Chain 2
18S rRNA

Nearby chains

Chain F
40S ribosomal protein S4
Chain J
eS8
Chain M
uS17
Chain Y
uS12

Coloring options:


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