J4_7SYM_004

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

AU*AG*CC*GU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYM|1|z|A|140
7SYM|1|z|U|141
*
7SYM|1|z|A|252
7SYM|1|z|G|253
*
7SYM|1|z|C|279
7SYM|1|z|C|280
*
7SYM|1|z|G|283
7SYM|1|z|U|284

Current chains

Chain z

HCV IRES

Nearby chains